These datasets are ready to be explored with Gitools 2.2 and above. You may download the any heatmap file from here or open them directly from within the latest version of Gitools.
You may download all the resources from this website or within Gitools. Launching Gitools requires Oracle Java 7 to be installed in your computer and having security settings set right as described on the Download page.
- Please make sure you are familiar with the TCGA publication guidelines when using any TCGA data for your research.
- The heatmap files available for download here are prepared to work with Gitools 2.2 (and newer).
This heatmap is an excerpt from the Pancancer supermatrix. It contains the multidimensional information for driver
genes across TCGA pan-cancer tumor samples. The samples are grouped by by COCA subtypes according to Hoadley et al., Cell 2014.
Genes from the cancer gene census and detected as high confidence drivers as detected by Tamborero et al.
Tamborero et al., Scientific Reports 2013
Hoadly et al., Cell. 2014 Aug 14;158(4):929-44. doi: 10.1016/j.cell.2014
This is the complete protein expression data set for the pancancer12 project. The heatmap contains 3500+ samples.File size: 5.60M
This is the complete pancancer file with all 5000+ samples and all 22'000+ genes.It contains data for Gene expression, Mutations, Copy number, Methylation.
The matrix file is in the compressed format (400mb) and thus it is recommended to download the file and open from local.