Part I
User’s guide

1 Introduction
 1.1 What is Gitools ?
 1.2 Authors
 1.3 Contacting
 1.4 Acknowledgements
 1.5 License
2 Loading Data
 2.1 Data types
 2.2 File formats
 2.3 How can I get data ready for my analysis ?
3 Importing Data
 3.1 IntOGen
 3.2 Biomart
4 Running Analysis
 4.1 Enrichment analysis
 4.2 GSEA
 4.3 Oncodrive analysis
 4.4 Correlations
 4.5 Combinations
5 Visualization of Data and Results
 5.1 Editors
 5.2 Heatmap
6 Exporting Work
 6.1 Data
 6.2 Heatmap figure
 6.3 PDF report
 6.4 HTML report