Datasets

These datasets are ready to be explored with Gitools 2.2 and above. You may download the any heatmap file from here or open them directly from within the latest version of Gitools.

You may download all the resources from this website or within Gitools. Launching Gitools requires Oracle Java 7 to be installed in your computer and having security settings set right as described on the Download page.

Important
- Please make sure you are familiar with the TCGA publication guidelines when using any TCGA data for your research.
- The heatmap files available for download here are prepared to work with Gitools 2.2 (and newer).

Driver mutations affecting each driver genomic element

This matrix represents the driver mutation affecting each driver genomic element across all tumors in the PCAWG cohort. Different types of driver mutations (point mutations, CNAs, SVs) are represented with different colors in the main dimension of the matrix, and included separately in different dimensions. Driver mutations were identified as described in Sabarinathan, Pich et al., 2017.

File size: 372.62K

Recurrence of each driver point mutation

The recurrence of each driver point mutation identified across all tumors in the PCAWG cohort. Both coding and non-coding mutations are included in the matrix. Driver point mutations were identified using onCohortDrive, a method described in Sabarinathan, Pich et al., 2017.

File size: 424.72K